PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 213aa    MW: 22976.8 Da    PI: 6.5926
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029061genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.34.6e-37291291100
       DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +CaaCk+lrr+Ca++ C+++pyf   +p+kfa+vhk+FGasnv+k+l+++ e++r da++slvyeA +r+rdPv+G++g i+ lq+q+++l++el +l
  Lus10029061  29 PCAACKLLRRRCAAQeCPFSPYFSPLEPHKFAYVHKVFGASNVSKMLTEVGESQRWDAANSLVYEASVRLRDPVHGCMGAISLLQHQIHSLESELTTL 126
                  7***********8655*******************************************************************************999 PP

       DUF260  98 kee 100
                  ++e
  Lus10029061 127 RAE 129
                  876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.74428130IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-3729127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MENSDDVERV MMLSSNSSQA SGGLNTITPC AACKLLRRRC AAQECPFSPY FSPLEPHKFA  60
YVHKVFGASN VSKMLTEVGE SQRWDAANSL VYEASVRLRD PVHGCMGAIS LLQHQIHSLE  120
SELTTLRAEI LHHRYNAAAA TPPSTMDIVT TTTTSPMIIN SPPPVDFSHD VRGQGAVLLP  180
PVTLSTDSSS SSSPSNRYGG ISNNDHNIPF YG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970407.13e-67PREDICTED: LOB domain-containing protein 15-like
SwissprotQ9AT611e-64LBD13_ARATH; LOB domain-containing protein 13
TrEMBLK3XRN18e-67K3XRN1_SETIT; Uncharacterized protein
STRINGSi004575m2e-66(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.13e-53LOB domain-containing protein 13